PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA11777 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA15661 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA16263 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA16264 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA16265 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA16266 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA18907 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA18911 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA19181 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA19182 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA20105 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA20106 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA21121 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA22537 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23356 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23357 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23358 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23360 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23361 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA23363 Alkaloid 16OMT medium pass
rhynchospora_pubera_mRNA23670 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA24634 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA24790 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA25641 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA25975 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA26766 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA26876 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA2753 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA29873 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA30164 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA31401 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA31562 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA31575 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA31984 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA32021 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA3283 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA33706 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA34093 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA34095 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA35214 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA35215 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA35216 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA35217 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA37243 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA38084 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA38085 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA38998 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA39001 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA40286 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA40392 Alkaloid 16OMT medium borderline