PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA11023 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA11024 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA12805 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1313 Flavonoid IFS medium pass
rhynchospora_pubera_mRNA13739 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA13748 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA14046 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA14646 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA14796 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA14809 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA14810 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15252 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15256 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1546 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1547 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1548 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1549 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA1559 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15827 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15828 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15829 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA15942 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA16068 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16164 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16165 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16166 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16167 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16413 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16427 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16428 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16430 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA16431 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA1659 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17032 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17033 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17034 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17036 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17037 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17321 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA17469 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA18068 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA19208 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19209 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19212 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19213 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19214 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19216 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19217 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19218 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA19219 Flavonoid IFS low borderline