PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA13688 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA20614 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA28725 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA30124 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA30269 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA30272 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA30273 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA30274 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA33110 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA37677 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA39778 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA43591 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA44961 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA45117 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA45119 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA45120 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA45121 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA47989 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA50083 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA54694 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA55947 Alkaloid LAMT low borderline
rhynchospora_pubera_mRNA65873 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA65874 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA68347 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA74043 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75216 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75218 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75220 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75367 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75368 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA75369 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA78217 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA82604 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA84719 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA87548 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA87549 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA87551 Alkaloid LAMT medium borderline
rhynchospora_pubera_mRNA89067 Alkaloid LAMT medium borderline