PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA1284 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA19871 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA20772 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA21169 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA21172 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA21174 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA21491 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA21615 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA21975 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA22001 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA22473 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA24812 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA26209 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA26880 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA27533 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27534 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27535 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27536 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27537 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27538 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA27539 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA28483 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_pubera_mRNA28508 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA29253 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
rhynchospora_pubera_mRNA29685 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA29867 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA29868 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA29869 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA29908 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
rhynchospora_pubera_mRNA29909 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA32446 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA32477 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA34280 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA38315 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA39926 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_pubera_mRNA40334 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA40338 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA40340 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA40341 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA40342 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA40656 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA40774 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA41204 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA41230 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA41717 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_pubera_mRNA42383 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42384 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42385 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42386 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_pubera_mRNA42387 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA