PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.75% Alkaloid pathway 23.25% Phenylpropanoid pathway 22.82% Flavonoid pathway 15.54% Rosmarinic acid pathway 7.92% Steroid pathway 4.71%
Family Distribution
C3'H/CYP98A 6.35% C4H 6.27% BAHD 5.28% UGT 4.78% POD 4.42% 7DLGT 4.4% UFGT 4.37% T3O 3.89%
Other Families 60.24%
More Families (97)
IFS 521 3.73% 4CL 478 3.42% CYP76 430 3.08% DWF4/CYP90B1 385 2.76% F3H 318 2.28% F3'H/CYP75B 314 2.25% BR6OX2/CYP85A2 280 2.0% NMT 260 1.86% CYP71 251 1.8% STR 239 1.71% PYKS 235 1.68% CAD 214 1.53% CSE 189 1.35% SMT1/SMT2/SMT3 175 1.25% TRI/TRII 168 1.2% HCT 161 1.15% COMT 158 1.13% 16OMT 151 1.08% CHS 150 1.07% H6H 149 1.07% PMT 148 1.06% SGD 145 1.04% CODM/T6ODM 144 1.03% LAC 141 1.01% CAS 126 0.9% RAS 122 0.87% T16H 116 0.83% IFR 115 0.82% SLS 114 0.82% CYP90D1 114 0.82% ANR 108 0.77% TPS 102 0.73% GS 99 0.71% GES 96 0.69% COR 82 0.59% NCS 76 0.54% IO 73 0.52% FNS 72 0.52% 7DLH 64 0.46% CYP51G1 63 0.45% TAT 59 0.42% PAL 54 0.39% CCR 52 0.37% G8O/G8H 49 0.35% 8HGO 46 0.33% F3'5'H/CYP75A 46 0.33% LAMT 38 0.27% CNMT 37 0.26% CPD/CYP90A1 36 0.26% F5H/CYP84A 34 0.24% BBE 29 0.21% BR6OX1/CYP85A1 29 0.21% DET2 28 0.2% ANS/LDOX 26 0.19% FPPS 26 0.19% CPR 24 0.17% DFR 22 0.16% HPPR 22 0.16% AACT 22 0.16% CYP719 21 0.15% MPO 21 0.15% CCoAOMT 19 0.14% SQS/FDFT1 18 0.13% CHI 17 0.12% ROT3/CYP90C1 17 0.12% HMGR 17 0.12% TYDC_DDC 16 0.11% MVD 16 0.11% CYP80B1 15 0.11% GGPPS 15 0.11% TDC 14 0.1% MVK 13 0.09% SMO1/SMO2 12 0.09% DXS 12 0.09% XMT_MXMT_DXMT 11 0.08% SQE 11 0.08% CMK/IspE 11 0.08% FLS 10 0.07% HYD1 9 0.06% ISY 8 0.06% DWF7 8 0.06% PMK 8 0.06% MCT/IspD 8 0.06% IDI 8 0.06% ADC 6 0.04% CPI1 6 0.04% FK 5 0.04% HDS/IspG 5 0.04% CYP80F1 4 0.03% DWF5 4 0.03% MDS/IspF 4 0.03% HMGS 4 0.03% HDR/IspH 4 0.03% DXR 4 0.03% 6OMT_4OMT_SOMT 3 0.02% DWF1 3 0.02% ODC 2 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: XMT_MXMT_DXMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA25110 Alkaloid XMT_MXMT_DXMT low borderline
rhynchospora_pubera_mRNA30268 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA31000 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA45116 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA49883 Alkaloid XMT_MXMT_DXMT low borderline
rhynchospora_pubera_mRNA52145 Alkaloid XMT_MXMT_DXMT low borderline
rhynchospora_pubera_mRNA70454 Alkaloid XMT_MXMT_DXMT low borderline
rhynchospora_pubera_mRNA75217 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA75219 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA87281 Alkaloid XMT_MXMT_DXMT medium borderline
rhynchospora_pubera_mRNA87552 Alkaloid XMT_MXMT_DXMT medium borderline