PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA18299 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA19354 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA22874 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA26382 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA28443 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA36681 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA38822 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA43307 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA44343 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA4784 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA49977 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA53250 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA55672 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA60775 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA62822 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA64908 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA68247 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA70816 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA71706 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA73767 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA74581 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA8 Rosmarinic Acid CPR medium pass
rhynchospora_pubera_mRNA82707 Rosmarinic Acid CPR low borderline
rhynchospora_pubera_mRNA89357 Rosmarinic Acid CPR medium pass