PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CNMT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA14955 Alkaloid CNMT medium pass
rhynchospora_pubera_mRNA16799 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA18212 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA18442 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA18950 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA19062 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA19063 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA21217 Alkaloid CNMT medium borderline
rhynchospora_pubera_mRNA22358 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA27454 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA28090 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA34332 Alkaloid CNMT medium pass
rhynchospora_pubera_mRNA34699 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA36772 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA39120 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA40388 Alkaloid CNMT medium borderline
rhynchospora_pubera_mRNA42308 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA42945 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA49435 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA54084 Alkaloid CNMT medium borderline
rhynchospora_pubera_mRNA55374 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA59472 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA59524 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA59856 Alkaloid CNMT medium pass
rhynchospora_pubera_mRNA60520 Alkaloid CNMT medium pass
rhynchospora_pubera_mRNA60910 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA62910 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA65212 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA66486 Alkaloid CNMT medium borderline
rhynchospora_pubera_mRNA67631 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA67697 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA72781 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA73404 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA83252 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA83317 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA89719 Alkaloid CNMT low borderline
rhynchospora_pubera_mRNA90345 Alkaloid CNMT low borderline