PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA10675 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA14528 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA1500 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA1501 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA15123 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA15444 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA15538 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA15637 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA15660 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA15662 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA15663 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA15682 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA16280 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16282 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA16304 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16708 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16710 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16990 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16991 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA16992 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA17496 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA17501 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA18157 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA18165 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA19843 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA19844 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA19845 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA19846 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA20127 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20441 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20442 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20445 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20518 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA21707 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA22363 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA22921 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24156 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24158 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24277 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24278 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24442 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24444 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24445 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24686 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA24832 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24834 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24835 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24838 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24958 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24961 Flavonoid F3H medium borderline