PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA15340 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA16781 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA19240 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA19273 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhynchospora_pubera_mRNA22796 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA23296 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA23298 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
rhynchospora_pubera_mRNA23694 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA26273 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA28384 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA28385 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA30708 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhynchospora_pubera_mRNA34274 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA34717 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA36127 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA38913 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhynchospora_pubera_mRNA43251 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA43252 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA45549 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhynchospora_pubera_mRNA47282 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA49050 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA49875 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA50392 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA50394 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA53148 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA55558 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA55587 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhynchospora_pubera_mRNA57710 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA59452 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA59453 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA60929 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA60930 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA62269 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA64998 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhynchospora_pubera_mRNA65021 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
rhynchospora_pubera_mRNA679 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA68136 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA68659 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA69050 Phenylpropanoid CCR medium pass CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhynchospora_pubera_mRNA71605 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA73711 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA73712 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA75809 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhynchospora_pubera_mRNA79314 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA80072 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA82310 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA82312 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA82812 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA83654 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhynchospora_pubera_mRNA87125 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH