PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA10183 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA11956 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA15794 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA18554 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA23256 Terpenoid AACT low borderline
rhynchospora_pubera_mRNA28255 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA30659 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA35695 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA36598 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA36601 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA43119 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA45498 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA50434 Terpenoid AACT low borderline
rhynchospora_pubera_mRNA58457 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA61821 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA62735 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA68614 Terpenoid AACT low borderline
rhynchospora_pubera_mRNA73578 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA75762 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA82353 Terpenoid AACT low borderline
rhynchospora_pubera_mRNA87174 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA89546 Terpenoid AACT medium borderline
rhynchospora_pubera_mRNA10474 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA10541 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA1131 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA12427 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA1262 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA12806 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA13371 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA13394 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA13753 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA1409 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA14658 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA14678 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA14722 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA14959 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA15126 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15139 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA15149 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA15184 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA15399 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15557 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA1557 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA1558 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15636 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15913 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15914 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA15916 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA1603 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA16138 Terpenoid BAHD medium pass