PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA16066 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA16067 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA16161 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA16162 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA16163 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA16414 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA17035 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA17071 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA18240 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA18410 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA19170 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA19942 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA21173 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA21429 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA22115 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA22261 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA24495 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA26290 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA26967 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA31366 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA34008 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA35068 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA35319 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA35322 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA35417 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA36740 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA37672 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA38238 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA39454 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA39617 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA40557 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA41804 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA45769 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA46207 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA47116 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA49193 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA51536 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA54125 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA54461 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA55036 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA56231 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA58730 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA59085 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA61296 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA61541 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA61635 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA62877 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA63795 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA64340 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA65098 Flavonoid FNS medium borderline