PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA10 Phenylpropanoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
rhynchospora_pubera_mRNA112 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA13661 Phenylpropanoid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
rhynchospora_pubera_mRNA14631 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_pubera_mRNA15095 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
rhynchospora_pubera_mRNA15177 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
rhynchospora_pubera_mRNA15314 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_pubera_mRNA15478 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
rhynchospora_pubera_mRNA15503 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA15747 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA15749 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA16246 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
rhynchospora_pubera_mRNA18074 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA18665 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA18698 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA18699 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA190 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
rhynchospora_pubera_mRNA19197 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA19856 Phenylpropanoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
rhynchospora_pubera_mRNA19857 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_pubera_mRNA20431 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA20931 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_pubera_mRNA20932 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_pubera_mRNA22176 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
rhynchospora_pubera_mRNA22311 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA22638 Phenylpropanoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_pubera_mRNA23193 Phenylpropanoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_pubera_mRNA2436 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA26385 Phenylpropanoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
rhynchospora_pubera_mRNA27236 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
rhynchospora_pubera_mRNA27452 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_pubera_mRNA28257 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_pubera_mRNA28435 Phenylpropanoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_pubera_mRNA29727 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA29728 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA30390 Phenylpropanoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_pubera_mRNA30934 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_pubera_mRNA30993 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_pubera_mRNA31201 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA31202 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_pubera_mRNA31542 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
rhynchospora_pubera_mRNA31543 Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_pubera_mRNA31925 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_pubera_mRNA31947 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_pubera_mRNA33875 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_pubera_mRNA33876 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
rhynchospora_pubera_mRNA34666 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_pubera_mRNA35237 Phenylpropanoid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
rhynchospora_pubera_mRNA35743 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
rhynchospora_pubera_mRNA35974 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY