PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX1/CYP85A1
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA14646 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA15252 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA16635 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA21175 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA22280 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA22282 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA25140 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA33134 Steroid BR6OX1/CYP85A1 low borderline
rhynchospora_pubera_mRNA34652 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA34861 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA40343 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA4524 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA48008 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA48034 Steroid BR6OX1/CYP85A1 low borderline
rhynchospora_pubera_mRNA49365 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA52893 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA54123 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA57796 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA59300 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA60163 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA60215 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA61076 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA62358 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA66447 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA78231 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA78254 Steroid BR6OX1/CYP85A1 low borderline
rhynchospora_pubera_mRNA83326 Steroid BR6OX1/CYP85A1 medium borderline
rhynchospora_pubera_mRNA84677 Steroid BR6OX1/CYP85A1 low borderline
rhynchospora_pubera_mRNA84703 Steroid BR6OX1/CYP85A1 medium borderline