PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA1313 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA13747 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA14677 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA16161 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA16414 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA16427 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA16428 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA16430 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA16431 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA17685 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA18068 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA19170 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA22813 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA23368 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA25219 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA26290 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA26963 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA26967 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA27474 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA28001 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA29837 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA29957 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30079 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30346 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30407 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30625 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30909 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA30910 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA31366 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA31531 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA32380 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA33892 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA34621 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA35053 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA35054 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA35055 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA35250 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA35319 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA36216 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA36926 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA37245 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA37296 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA41804 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA41805 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA42325 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA42856 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA44700 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA45189 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA45755 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA45768 Alkaloid T16H medium borderline