PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
Reset
Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA13985 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA14944 Alkaloid 8HGO medium pass
rhynchospora_pubera_mRNA19671 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA24630 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA30337 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31674 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31675 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31676 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31677 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA33795 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA34346 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA38511 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA38521 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA45178 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46521 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46522 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46523 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46524 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA47796 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA47797 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA48679 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA51661 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA55883 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA55892 Alkaloid 8HGO medium pass
rhynchospora_pubera_mRNA59870 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA60506 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA64603 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA6764 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA69963 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA71764 Alkaloid 8HGO low borderline
rhynchospora_pubera_mRNA75427 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA76759 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA76760 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA76761 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA78022 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA78023 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA78862 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA81331 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA84060 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA84908 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA84909 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA86171 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA86172 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA86174 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA86175 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA87483 Alkaloid 8HGO medium borderline