PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA10675 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA15637 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA15660 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA15662 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA15663 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA15682 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA20127 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24158 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24277 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24442 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24443 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24444 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA24445 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA25370 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA31625 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA33216 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA33596 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA3500 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA35806 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA35826 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA35827 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA35828 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA35851 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA38063 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA46474 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA48485 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA48824 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51005 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51130 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51160 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
rhynchospora_pubera_mRNA51484 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51485 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51486 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51487 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51488 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA51502 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA52408 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA56412 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58296 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58318 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58320 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58321 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58323 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA58345 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61934 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61954 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61955 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61956 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61958 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
rhynchospora_pubera_mRNA61981 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA