PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA15569 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA15827 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA16430 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA16431 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA19725 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA24034 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA25990 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA31408 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA35053 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA35055 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA35659 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA35915 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA36216 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA38458 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA46256 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA47368 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA51237 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA56034 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA57792 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA58228 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA58495 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA59098 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA61278 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA61280 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA61282 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA61786 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA62051 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA6319 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA64402 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA69401 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA75230 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA76495 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA80754 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA81164 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA86437 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA87687 Steroid CPD/CYP90A1 medium borderline