PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA11989 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA13739 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA14046 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA17071 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA17321 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19736 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19738 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19968 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA2010 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA20426 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA20773 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA21310 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA21493 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA23362 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA23368 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA24397 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA24738 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA25582 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA27474 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA29587 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA29835 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA29836 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA30909 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA30910 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA31129 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA31269 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA37672 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA37673 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA38216 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA38378 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA38449 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA38450 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA39454 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA39616 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA39927 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA40480 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA41852 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA42325 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA43018 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA44451 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA44696 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA44697 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA45755 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA45768 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA45769 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA45957 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA46120 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA48003 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA49110 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA49366 Steroid CYP90D1 medium borderline