PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA1230 Alkaloid BBE medium borderline BBE__00002__sp_F1T160_BBLA_TOBAC
rhynchospora_pubera_mRNA16271 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
rhynchospora_pubera_mRNA21046 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
rhynchospora_pubera_mRNA21048 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA21051 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA22905 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA35206 Alkaloid BBE medium borderline BBE__00002__sp_F1T160_BBLA_TOBAC
rhynchospora_pubera_mRNA35208 Alkaloid BBE medium borderline BBE__00002__sp_F1T160_BBLA_TOBAC
rhynchospora_pubera_mRNA40208 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
rhynchospora_pubera_mRNA40209 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
rhynchospora_pubera_mRNA40211 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
rhynchospora_pubera_mRNA40212 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA40213 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA40217 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA49949 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA54248 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA54249 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
rhynchospora_pubera_mRNA54253 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA54254 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA54256 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA58932 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
rhynchospora_pubera_mRNA58934 Alkaloid BBE medium borderline BBE__00002__sp_F1T160_BBLA_TOBAC
rhynchospora_pubera_mRNA61439 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
rhynchospora_pubera_mRNA66312 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
rhynchospora_pubera_mRNA66314 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA66315 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA66318 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA66319 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
rhynchospora_pubera_mRNA82735 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH