PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA23665 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA23666 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA23667 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA2407 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA2408 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA26296 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA26297 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA26304 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
rhynchospora_pubera_mRNA34223 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA48998 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA50511 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA50512 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA53166 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA53167 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA69025 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA69026 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA69027 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA71626 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA71627 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA79278 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA80094 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA80095 Terpenoid FPPS medium pass FPPS__00001__sp_B8XA40_ZFPS_SOLHA
rhynchospora_pubera_mRNA81956 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA81957 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA81958 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
rhynchospora_pubera_mRNA83714 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI