PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANR
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA15340 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA19240 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA22155 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA22160 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA22317 Flavonoid ANR medium pass
rhynchospora_pubera_mRNA22796 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA23296 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA23298 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA23694 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA23807 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA26273 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA28058 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA28384 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA28623 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA30326 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA30708 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31726 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31727 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31729 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31730 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31731 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31732 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31733 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA31836 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA32418 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA32963 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA34274 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA36127 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA3655 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA38936 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA42917 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA43492 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA45169 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA45549 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA45826 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46582 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46583 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46585 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46586 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46587 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46588 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46589 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46683 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA47283 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA47836 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA47837 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA49050 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA49240 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA49245 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA49396 Flavonoid ANR medium borderline