PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA16338 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA16339 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA17733 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA19966 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
rhynchospora_pubera_mRNA32098 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
rhynchospora_pubera_mRNA32510 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA35143 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA40339 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
rhynchospora_pubera_mRNA46952 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
rhynchospora_pubera_mRNA47369 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA48003 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA58998 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA61374 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE
rhynchospora_pubera_mRNA61375 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
rhynchospora_pubera_mRNA61785 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA77184 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
rhynchospora_pubera_mRNA77597 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA78225 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA84709 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA85341 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
rhynchospora_pubera_mRNA85742 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI