PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA38828 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA38829 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA38830 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA38831 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA40226 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA40329 Flavonoid IFR high pass
rhynchospora_pubera_mRNA40674 Flavonoid IFR high pass
rhynchospora_pubera_mRNA40676 Flavonoid IFR high pass
rhynchospora_pubera_mRNA40681 Flavonoid IFR high pass
rhynchospora_pubera_mRNA40685 Flavonoid IFR high pass
rhynchospora_pubera_mRNA42497 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA43101 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA43518 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA44260 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA45482 Flavonoid IFR high pass
rhynchospora_pubera_mRNA46471 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA47079 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA47486 Flavonoid IFR high pass
rhynchospora_pubera_mRNA47650 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA47835 Flavonoid IFR medium borderline
rhynchospora_pubera_mRNA49096 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA49473 Flavonoid IFR high pass
rhynchospora_pubera_mRNA53427 Flavonoid IFR high pass
rhynchospora_pubera_mRNA53429 Flavonoid IFR high pass
rhynchospora_pubera_mRNA53433 Flavonoid IFR high pass
rhynchospora_pubera_mRNA53435 Flavonoid IFR high pass
rhynchospora_pubera_mRNA54136 Flavonoid IFR high pass
rhynchospora_pubera_mRNA54238 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA55668 Flavonoid IFR high pass
rhynchospora_pubera_mRNA57258 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA57279 Flavonoid IFR high pass
rhynchospora_pubera_mRNA58146 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA59213 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA59546 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA60123 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA60255 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA60840 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA61163 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA62132 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA62668 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA63341 Flavonoid IFR high pass
rhynchospora_pubera_mRNA63359 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA63559 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA64912 Flavonoid IFR high pass
rhynchospora_pubera_mRNA66330 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA66434 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA66769 Flavonoid IFR high pass
rhynchospora_pubera_mRNA66771 Flavonoid IFR high pass
rhynchospora_pubera_mRNA66776 Flavonoid IFR high pass
rhynchospora_pubera_mRNA66780 Flavonoid IFR high pass