PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA84703 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA84709 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA84927 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA84989 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85080 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA85181 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85184 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85194 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85339 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA85341 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA8545 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85481 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85654 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85806 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA85918 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86308 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86309 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86312 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA86437 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA86462 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86577 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA86682 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA86906 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86908 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86909 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA86924 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA87193 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA87274 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA87299 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA87521 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA87522 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA87687 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA88207 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA88915 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89019 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89310 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89607 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89608 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89644 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89645 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89670 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89671 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89695 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA90327 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA90771 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA90773 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA9625 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA9705 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA13718 Flavonoid PAL high pass
rhynchospora_pubera_mRNA18633 Flavonoid PAL high pass