PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA86699 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA86701 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA86704 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA86841 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA86842 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87386 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87388 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87389 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87390 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA87772 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87909 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA87910 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88541 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88560 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88561 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88594 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88595 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA88596 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88597 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88730 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88731 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA88788 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA89155 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA90199 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA90380 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA91167 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA10 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA112 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA13661 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA14631 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA15095 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15177 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15314 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15478 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15503 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15747 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA15749 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA16246 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA18074 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA18665 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA18698 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA18699 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA190 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA19197 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA19856 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA19857 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA20431 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA20931 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA20932 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA22176 Phenylpropanoid 4CL low borderline