PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA72779 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA73580 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA73760 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA74826 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA74827 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA75481 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA76053 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA76118 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA76286 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA76634 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA77012 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA77032 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA78950 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA78951 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA82422 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA82983 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA83297 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA83427 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA83984 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA83985 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA85905 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA85924 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA85925 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA85926 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA86300 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA86640 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA86820 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA86884 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA87429 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA88066 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA88067 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA89365 Phenylpropanoid 4CL medium pass
rhynchospora_pubera_mRNA89544 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA90348 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA90552 Phenylpropanoid 4CL low borderline
rhynchospora_pubera_mRNA11023 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA11024 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA11989 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA12491 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA12805 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA13107 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA1313 Phenylpropanoid C3'H/CYP98A medium pass
rhynchospora_pubera_mRNA13705 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA13739 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA13747 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA13748 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA14046 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA14809 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA14810 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA14863 Phenylpropanoid C3'H/CYP98A medium borderline