PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA81361 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81364 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA81434 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81436 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81493 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81494 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81495 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81537 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81538 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81540 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81541 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA81974 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA82318 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA82319 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA82532 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA82630 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA82808 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA82859 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA83041 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA83136 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA83424 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA83613 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA84009 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA84010 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA84011 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA84012 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA84106 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA84108 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA84110 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA84219 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA84916 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA84917 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA84918 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA85091 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA85220 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA85221 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA85344 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA85345 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA85346 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA86643 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA86644 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA86697 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA86698 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA86699 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA86701 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA86704 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA86841 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA86842 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA87386 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA87388 Alkaloid 7DLGT medium pass