PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA64279 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA64854 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA64868 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA65098 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA65488 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA67464 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA70602 Phenylpropanoid C4H/CYP73A low borderline
rhynchospora_pubera_mRNA12069 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA1284 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA14840 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA17877 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA18148 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA19667 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA19671 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA19787 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA19788 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA19871 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA21491 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA21975 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA22160 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA22253 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA23807 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA24854 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA25251 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA25668 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA25861 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA25862 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27377 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA27380 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27533 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27534 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27535 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27536 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27537 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA27538 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA27539 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA28508 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA28510 Phenylpropanoid CAD medium pass
rhynchospora_pubera_mRNA28623 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA30337 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA31674 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA31675 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA31676 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA31677 Phenylpropanoid CAD low borderline
rhynchospora_pubera_mRNA31726 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA31727 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA31728 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA31729 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA31730 Phenylpropanoid CAD medium borderline
rhynchospora_pubera_mRNA31731 Phenylpropanoid CAD medium borderline