PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA59453 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA60929 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA60930 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA62269 Phenylpropanoid CCR medium pass
rhynchospora_pubera_mRNA64998 Phenylpropanoid CCR medium pass
rhynchospora_pubera_mRNA65021 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA679 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA68136 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA68659 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA69050 Phenylpropanoid CCR medium pass
rhynchospora_pubera_mRNA71605 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA73711 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA73712 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA75809 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA79314 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA80072 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA82310 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA82312 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA82812 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA83654 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA87125 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA89410 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA89411 Phenylpropanoid CCR medium borderline
rhynchospora_pubera_mRNA16327 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA23619 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA23702 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA29007 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA35153 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA43864 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA50755 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA50756 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA50757 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA58989 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA61385 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA68978 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA69057 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA69059 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA69060 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA81922 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA81923 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA82001 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA88786 Phenylpropanoid CCoAOMT medium pass
rhynchospora_pubera_mRNA11585 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA11739 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA11777 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA13701 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA15661 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA16262 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA16263 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA16264 Phenylpropanoid COMT medium pass