PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA52459 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55528 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55529 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55533 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55535 Alkaloid 7DLH medium pass
rhynchospora_pubera_mRNA55536 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55538 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55539 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA56253 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA56255 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA58495 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA61786 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA62677 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA64317 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA64318 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65042 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65044 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65046 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65054 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65055 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA69720 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA70921 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA73475 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA74690 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA76495 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA77124 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA81076 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA81513 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA85481 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA85806 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA86437 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA88207 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA89643 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA13985 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA14944 Alkaloid 8HGO medium pass
rhynchospora_pubera_mRNA19671 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA24630 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA30337 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31674 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31675 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31676 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA31677 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA33795 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA34346 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA38511 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA38521 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA45178 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46521 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46522 Alkaloid 8HGO medium borderline
rhynchospora_pubera_mRNA46523 Alkaloid 8HGO medium borderline