PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA16380 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA16869 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA16870 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA16871 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17507 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17884 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17885 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17886 Alkaloid PYKS medium pass
rhynchospora_pubera_mRNA17887 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17888 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA17889 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA18163 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA18186 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA19146 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA19163 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA19253 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA19254 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA1962 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA19674 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA20104 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA21305 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA24886 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA25371 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA25750 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA25797 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA25798 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA25918 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA26322 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA27554 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA29292 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA30358 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA30468 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA30521 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA30522 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA31274 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA31380 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA31540 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA31541 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA32606 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA32789 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA32991 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA33250 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33251 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33252 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA33646 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA34323 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35102 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35553 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA35625 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA35812 Alkaloid PYKS high pass