PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA15829 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA15942 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA16058 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA16066 Alkaloid T3O high pass
rhynchospora_pubera_mRNA16068 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA16230 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA16413 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA16415 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA1659 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA16635 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA17032 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17033 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17034 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17036 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17037 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17066 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17071 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA17321 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA17348 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA17565 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA18557 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA19169 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19736 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19738 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19811 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA19812 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA19872 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19873 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19898 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA19908 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19984 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA19986 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20005 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20007 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA2010 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA20422 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20425 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20426 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA20773 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21175 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA21208 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA21492 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21493 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA21910 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA22136 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22261 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22279 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA22280 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA22459 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA22602 Alkaloid T3O low borderline