PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA55679 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA55716 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA57195 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA63420 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA64854 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA64868 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA66447 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA75173 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA77469 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA85468 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA87474 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA87738 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA87739 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA10432 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA20012 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA30498 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA31510 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA34284 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA38171 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA45337 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA46358 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA49061 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA54960 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA56294 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA64272 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA75591 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA76598 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA79351 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA83641 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA86337 Flavonoid CHI medium pass
rhynchospora_pubera_mRNA13035 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA13326 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA15411 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA15674 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA15675 Flavonoid CHS low borderline
rhynchospora_pubera_mRNA15930 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA16869 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA16870 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA16871 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17507 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17884 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17885 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17886 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17887 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17888 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA17889 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA18186 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA19146 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA19163 Flavonoid CHS medium pass
rhynchospora_pubera_mRNA20104 Flavonoid CHS medium pass