PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold6570422100 Alkaloid T3O medium borderline
Csimscaffold6570422110 Alkaloid T3O medium borderline
Csimscaffold6570422120 Alkaloid T3O medium borderline
Csimscaffold6570422150 Alkaloid T3O medium borderline
Csimscaffold6580422220 Alkaloid T3O low borderline
Csimscaffold6600423420 Alkaloid T3O low borderline
Csimscaffold6740427310 Alkaloid T3O medium pass
Csimscaffold700435960 Alkaloid T3O medium borderline
Csimscaffold7020437000 Alkaloid T3O medium borderline
Csimscaffold7090438220 Alkaloid T3O low borderline
Csimscaffold7310444640 Alkaloid T3O medium borderline
Csimscaffold7700454850 Alkaloid T3O low borderline
Csimscaffold7980461350 Alkaloid T3O medium borderline
Csimscaffold7980461390 Alkaloid T3O medium borderline
Csimscaffold80462150 Alkaloid T3O medium borderline
Csimscaffold8190467620 Alkaloid T3O low borderline
Csimscaffold8240468880 Alkaloid T3O low borderline
Csimscaffold8280469620 Alkaloid T3O low borderline
Csimscaffold8560476460 Alkaloid T3O medium pass
Csimscaffold8610478120 Alkaloid T3O low borderline
Csimscaffold8660479180 Alkaloid T3O medium pass
Csimscaffold8810482940 Alkaloid T3O medium pass
Csimscaffold8840483380 Alkaloid T3O low borderline
Csimscaffold8910485040 Alkaloid T3O medium borderline
Csimscaffold9160492440 Alkaloid T3O medium pass
Csimscaffold9280495680 Alkaloid T3O medium borderline
Csimscaffold9280495710 Alkaloid T3O medium borderline
Csimscaffold9330496850 Alkaloid T3O medium pass
Csimscaffold9510501050 Alkaloid T3O medium borderline
Csimscaffold9580502420 Alkaloid T3O medium borderline
Csimscaffold9580502430 Alkaloid T3O medium borderline
Csimscaffold960502820 Alkaloid T3O medium pass
Csimscaffold960502870 Alkaloid T3O medium borderline
Csimscaffold960502880 Alkaloid T3O medium borderline
Csimscaffold9610503410 Alkaloid T3O medium pass
Csimscaffold9810508350 Alkaloid T3O low borderline
Csimscaffold9810508380 Alkaloid T3O low borderline
Csimscaffold9830508770 Alkaloid T3O medium borderline
Csimscaffold9930511220 Alkaloid T3O medium borderline
Csimscaffold4010335110 Alkaloid TDC low borderline
Csimscaffold4970373490 Alkaloid TDC medium borderline
Csimscaffold6990434750 Alkaloid TDC low borderline
Csimscaffold10160005450 Alkaloid TRI/TRII low borderline
Csimscaffold10160005470 Alkaloid TRI/TRII low borderline
Csimscaffold10560014210 Alkaloid TRI/TRII medium pass
Csimscaffold10720017750 Alkaloid TRI/TRII low borderline
Csimscaffold110023030 Alkaloid TRI/TRII medium pass
Csimscaffold12830061640 Alkaloid TRI/TRII medium pass
Csimscaffold12940063780 Alkaloid TRI/TRII low borderline
Csimscaffold1370080590 Alkaloid TRI/TRII low borderline