Calamus simplicifolius (calamus_simplicifolius)
Imported from atlas release summary for Calamus simplicifolius.
2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2597
Candidate Genes
C4H
6.64%
BAHD
6.15%
C3'H/CYP98A
4.93%
UGT
4.83%
4CL
4.37%
7DLGT
3.92%
POD
3.79%
UFGT
3.7%
Other Families
61.67%
More Families (97)
CYP76
218
3.65%
IFS
217
3.64%
T3O
188
3.15%
DWF4/CYP90B1
154
2.58%
NMT
130
2.18%
F3H
123
2.06%
CAD
118
1.98%
F3'H/CYP75B
99
1.66%
BR6OX2/CYP85A2
88
1.47%
SMT1/SMT2/SMT3
87
1.46%
CYP71
86
1.44%
COMT
80
1.34%
CAS
76
1.27%
PYKS
74
1.24%
LAC
72
1.21%
STR
69
1.16%
CODM/T6ODM
68
1.14%
TRI/TRII
66
1.11%
GS
63
1.06%
HCT
62
1.04%
H6H
58
0.97%
T16H
58
0.97%
G8O/G8H
57
0.96%
PMT
56
0.94%
CSE
55
0.92%
GES
54
0.9%
RAS
54
0.9%
TPS
54
0.9%
16OMT
50
0.84%
CCR
50
0.84%
CHS
45
0.75%
F5H/CYP84A
45
0.75%
IFR
42
0.7%
SGD
40
0.67%
FNS
40
0.67%
ANR
40
0.67%
PAL
39
0.65%
CYP90D1
38
0.64%
DFR
37
0.62%
SLS
35
0.59%
IO
33
0.55%
F3'5'H/CYP75A
33
0.55%
8HGO
30
0.5%
BBE
26
0.44%
COR
25
0.42%
BR6OX1/CYP85A1
24
0.4%
NCS
23
0.39%
CCoAOMT
23
0.39%
CYP51G1
23
0.39%
ADC
22
0.37%
CPD/CYP90A1
20
0.34%
TYDC_DDC
16
0.27%
ROT3/CYP90C1
16
0.27%
7DLH
15
0.25%
SQS/FDFT1
14
0.23%
CYP80B1
13
0.22%
LAMT
13
0.22%
TAT
13
0.22%
6OMT_4OMT_SOMT
12
0.2%
CYP719
12
0.2%
MPO
12
0.2%
HPPR
11
0.18%
FPPS
11
0.18%
DWF1
10
0.17%
ANS/LDOX
9
0.15%
CHI
8
0.13%
XMT_MXMT_DXMT
7
0.12%
CNMT
7
0.12%
ISY
7
0.12%
CPR
7
0.12%
DWF7
7
0.12%
AACT
7
0.12%
SMO1/SMO2
6
0.1%
GGPPS
6
0.1%
CMK/IspE
5
0.08%
MVK
5
0.08%
DXS
5
0.08%
ODC
4
0.07%
FLS
4
0.07%
FK
4
0.07%
HYD1
4
0.07%
DET2
4
0.07%
SQE
4
0.07%
HDS/IspG
4
0.07%
TDC
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
HMGS
3
0.05%
MDS/IspF
3
0.05%
HMGR
3
0.05%
MCT/IspD
2
0.03%
PMK
2
0.03%
CYP80F1
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 701 | 20 | UGT (261) | View species results |
| Alkaloid pathway | 581 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 578 | 13 | POD (193) | View species results |
| Flavonoid pathway | 355 | 12 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 220 | 7 | C4H (97) | View species results |
| Steroid pathway | 162 | 12 | CAS (69) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2163 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 483 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csimscaffold10510013380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold10510013390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold10880020730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold11860043090 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold12230051250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold12490055690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold12750060340 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold13120068220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold13150068590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold13380072440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold13420073720 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold13680079810 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold14050088110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold14050088120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold170135850 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold170135860 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold17240139360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold1790147320 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold1800149280 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold18190152110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold1820152340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold18890160820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold18890160830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold1900163000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold1950169150 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold2040181470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold2040181640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold2040181650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold2040181660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold2040181680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold21270194280 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold22280204650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold2280209740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold23440217350 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold3310297580 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold3340299320 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold3490307430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold4240345930 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold4260346500 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold430348120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold430348130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold430348270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold4320349550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold43740351560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold4460355730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold5090378040 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold5120379830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold5140380310 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Csimscaffold5280384090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Csimscaffold550391080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |