Calamus simplicifolius (calamus_simplicifolius)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 26.99% Alkaloid pathway 22.37% Phenylpropanoid pathway 22.26% Flavonoid pathway 13.67% Rosmarinic acid pathway 8.47% Steroid pathway 6.24%

Family Distribution

2597 Candidate Genes

C4H 6.64% BAHD 6.15% C3'H/CYP98A 4.93% UGT 4.83% 4CL 4.37% 7DLGT 3.92% POD 3.79% UFGT 3.7%

Other Families 61.67%

More Families (97)

CYP76 218 3.65% IFS 217 3.64% T3O 188 3.15% DWF4/CYP90B1 154 2.58% NMT 130 2.18% F3H 123 2.06% CAD 118 1.98% F3'H/CYP75B 99 1.66% BR6OX2/CYP85A2 88 1.47% SMT1/SMT2/SMT3 87 1.46% CYP71 86 1.44% COMT 80 1.34% CAS 76 1.27% PYKS 74 1.24% LAC 72 1.21% STR 69 1.16% CODM/T6ODM 68 1.14% TRI/TRII 66 1.11% GS 63 1.06% HCT 62 1.04% H6H 58 0.97% T16H 58 0.97% G8O/G8H 57 0.96% PMT 56 0.94% CSE 55 0.92% GES 54 0.9% RAS 54 0.9% TPS 54 0.9% 16OMT 50 0.84% CCR 50 0.84% CHS 45 0.75% F5H/CYP84A 45 0.75% IFR 42 0.7% SGD 40 0.67% FNS 40 0.67% ANR 40 0.67% PAL 39 0.65% CYP90D1 38 0.64% DFR 37 0.62% SLS 35 0.59% IO 33 0.55% F3'5'H/CYP75A 33 0.55% 8HGO 30 0.5% BBE 26 0.44% COR 25 0.42% BR6OX1/CYP85A1 24 0.4% NCS 23 0.39% CCoAOMT 23 0.39% CYP51G1 23 0.39% ADC 22 0.37% CPD/CYP90A1 20 0.34% TYDC_DDC 16 0.27% ROT3/CYP90C1 16 0.27% 7DLH 15 0.25% SQS/FDFT1 14 0.23% CYP80B1 13 0.22% LAMT 13 0.22% TAT 13 0.22% 6OMT_4OMT_SOMT 12 0.2% CYP719 12 0.2% MPO 12 0.2% HPPR 11 0.18% FPPS 11 0.18% DWF1 10 0.17% ANS/LDOX 9 0.15% CHI 8 0.13% XMT_MXMT_DXMT 7 0.12% CNMT 7 0.12% ISY 7 0.12% CPR 7 0.12% DWF7 7 0.12% AACT 7 0.12% SMO1/SMO2 6 0.1% GGPPS 6 0.1% CMK/IspE 5 0.08% MVK 5 0.08% DXS 5 0.08% ODC 4 0.07% FLS 4 0.07% FK 4 0.07% HYD1 4 0.07% DET2 4 0.07% SQE 4 0.07% HDS/IspG 4 0.07% TDC 3 0.05% CPI1 3 0.05% DWF5 3 0.05% IDI 3 0.05% MVD 3 0.05% HMGS 3 0.05% MDS/IspF 3 0.05% HMGR 3 0.05% MCT/IspD 2 0.03% PMK 2 0.03% CYP80F1 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	701	20	UGT (261)	View species results
Alkaloid pathway	581	23	7DLGT (118)	View species results
Phenylpropanoid pathway	578	13	POD (193)	View species results
Flavonoid pathway	355	12	UFGT (195)	View species results
Rosmarinic acid pathway	220	7	C4H (97)	View species results
Steroid pathway	162	12	CAS (69)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	2163	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	483	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Csimscaffold100001290	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Csimscaffold10000550	Alkaloid	NMT	low	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold10090003720	Alkaloid	NMT	medium	borderline	NMT__00001__sp_A0A075D654_ANMT_RAUSE
Csimscaffold1010003980	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Csimscaffold10210006760	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
Csimscaffold1030008660	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Csimscaffold1060014860	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold10650016170	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold10650016190	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Csimscaffold11290029620	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Csimscaffold11510034430	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Csimscaffold1160036300	Alkaloid	NMT	medium	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Csimscaffold1160036320	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
Csimscaffold11660037760	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Csimscaffold11750040360	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold11880043420	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold12570057190	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold1270059090	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold12730059980	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold13350071930	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Csimscaffold1360077840	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
Csimscaffold13680079760	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Csimscaffold13690079960	Alkaloid	NMT	medium	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Csimscaffold14110089080	Alkaloid	NMT	medium	borderline	NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
Csimscaffold14250091540	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Csimscaffold14250091550	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Csimscaffold14840101730	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Csimscaffold15040105930	Alkaloid	NMT	medium	borderline	NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Csimscaffold1550113160	Alkaloid	NMT	low	borderline	NMT__00068__sp_Q9XI84_RBCMT_ARATH
Csimscaffold15740117060	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Csimscaffold16050121960	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
Csimscaffold16280125390	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
Csimscaffold16350126400	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold17200138900	Alkaloid	NMT	low	borderline	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Csimscaffold17820146420	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold1920165480	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Csimscaffold19310166850	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Csimscaffold19330167030	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Csimscaffold20260179600	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold20760187390	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold2120193450	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
Csimscaffold21430195980	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Csimscaffold21870199790	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold22510207370	Alkaloid	NMT	medium	pass	NMT__00034__sp_Q5VN06_CLF_ORYSJ
Csimscaffold230212330	Alkaloid	NMT	medium	borderline	NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Csimscaffold23290215770	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold2380220720	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Csimscaffold250232560	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Csimscaffold25340236150	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Csimscaffold2570239330	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH