PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Csimscaffold1020006200 Alkaloid PYKS high pass
Csimscaffold1020006240 Alkaloid PYKS high pass
Csimscaffold1020006250 Alkaloid PYKS medium pass
Csimscaffold1020006260 Alkaloid PYKS high pass
Csimscaffold1060015020 Alkaloid PYKS low borderline
Csimscaffold11780041060 Alkaloid PYKS low borderline
Csimscaffold12340053000 Alkaloid PYKS medium pass
Csimscaffold12420054410 Alkaloid PYKS low borderline
Csimscaffold12610057960 Alkaloid PYKS low borderline
Csimscaffold1370080080 Alkaloid PYKS medium pass
Csimscaffold13880084160 Alkaloid PYKS low borderline
Csimscaffold14730099960 Alkaloid PYKS high pass
Csimscaffold14940103330 Alkaloid PYKS low borderline
Csimscaffold150104420 Alkaloid PYKS low borderline
Csimscaffold15050106080 Alkaloid PYKS high pass
Csimscaffold15050106090 Alkaloid PYKS high pass
Csimscaffold15050106120 Alkaloid PYKS high pass
Csimscaffold15720116790 Alkaloid PYKS low borderline
Csimscaffold16540128940 Alkaloid PYKS low borderline
Csimscaffold170135700 Alkaloid PYKS high pass
Csimscaffold1730139980 Alkaloid PYKS low borderline
Csimscaffold17340140530 Alkaloid PYKS low borderline
Csimscaffold1760143920 Alkaloid PYKS low borderline
Csimscaffold17950148090 Alkaloid PYKS low borderline
Csimscaffold18890160840 Alkaloid PYKS high pass
Csimscaffold190162960 Alkaloid PYKS medium pass
Csimscaffold1940167700 Alkaloid PYKS high pass
Csimscaffold20950190120 Alkaloid PYKS high pass
Csimscaffold20950190150 Alkaloid PYKS high pass
Csimscaffold21350195080 Alkaloid PYKS medium pass
Csimscaffold2290210690 Alkaloid PYKS high pass
Csimscaffold2290210700 Alkaloid PYKS medium pass
Csimscaffold2290210720 Alkaloid PYKS medium pass
Csimscaffold2290210760 Alkaloid PYKS high pass
Csimscaffold2290210780 Alkaloid PYKS high pass
Csimscaffold2290210810 Alkaloid PYKS high pass
Csimscaffold2290210820 Alkaloid PYKS high pass
Csimscaffold23280215720 Alkaloid PYKS low borderline
Csimscaffold2480231070 Alkaloid PYKS low borderline
Csimscaffold25090233920 Alkaloid PYKS high pass
Csimscaffold2650246890 Alkaloid PYKS high pass
Csimscaffold2730254730 Alkaloid PYKS high pass
Csimscaffold2740255950 Alkaloid PYKS low borderline
Csimscaffold27870258980 Alkaloid PYKS low borderline
Csimscaffold27870259010 Alkaloid PYKS low borderline
Csimscaffold28030261570 Alkaloid PYKS low borderline
Csimscaffold28030261590 Alkaloid PYKS low borderline
Csimscaffold2870265800 Alkaloid PYKS high pass
Csimscaffold2870265820 Alkaloid PYKS high pass
Csimscaffold2870265840 Alkaloid PYKS high pass