PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Csimscaffold10410011340 Alkaloid IO medium borderline
Csimscaffold1080019040 Alkaloid IO medium borderline
Csimscaffold1090020920 Alkaloid IO medium pass
Csimscaffold1090021150 Alkaloid IO medium borderline
Csimscaffold11150026560 Alkaloid IO medium borderline
Csimscaffold120046280 Alkaloid IO medium borderline
Csimscaffold13540076330 Alkaloid IO medium borderline
Csimscaffold15300110390 Alkaloid IO medium borderline
Csimscaffold16320126140 Alkaloid IO medium borderline
Csimscaffold1720138500 Alkaloid IO low borderline
Csimscaffold18250153170 Alkaloid IO medium pass
Csimscaffold21130192860 Alkaloid IO medium borderline
Csimscaffold22030202370 Alkaloid IO medium borderline
Csimscaffold22030202380 Alkaloid IO medium borderline
Csimscaffold22870210390 Alkaloid IO medium borderline
Csimscaffold24910232060 Alkaloid IO low borderline
Csimscaffold2760257200 Alkaloid IO medium borderline
Csimscaffold27730258350 Alkaloid IO low borderline
Csimscaffold290267970 Alkaloid IO medium borderline
Csimscaffold3850325870 Alkaloid IO low borderline
Csimscaffold3910329280 Alkaloid IO medium borderline
Csimscaffold40100335400 Alkaloid IO low borderline
Csimscaffold40333550 Alkaloid IO low borderline
Csimscaffold4420354400 Alkaloid IO medium borderline
Csimscaffold520381410 Alkaloid IO medium borderline
Csimscaffold520381420 Alkaloid IO medium borderline
Csimscaffold5360386820 Alkaloid IO medium borderline
Csimscaffold610409190 Alkaloid IO medium borderline
Csimscaffold6230412700 Alkaloid IO medium borderline
Csimscaffold8100465710 Alkaloid IO medium borderline
Csimscaffold8200468200 Alkaloid IO medium borderline
Csimscaffold9520501230 Alkaloid IO low borderline
Csimscaffold9570502360 Alkaloid IO medium borderline