Calamus simplicifolius (calamus_simplicifolius)
Imported from atlas release summary for Calamus simplicifolius.
2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2597
Candidate Genes
C4H
6.64%
BAHD
6.15%
C3'H/CYP98A
4.93%
UGT
4.83%
4CL
4.37%
7DLGT
3.92%
POD
3.79%
UFGT
3.7%
Other Families
61.67%
More Families (97)
CYP76
218
3.65%
IFS
217
3.64%
T3O
188
3.15%
DWF4/CYP90B1
154
2.58%
NMT
130
2.18%
F3H
123
2.06%
CAD
118
1.98%
F3'H/CYP75B
99
1.66%
BR6OX2/CYP85A2
88
1.47%
SMT1/SMT2/SMT3
87
1.46%
CYP71
86
1.44%
COMT
80
1.34%
CAS
76
1.27%
PYKS
74
1.24%
LAC
72
1.21%
STR
69
1.16%
CODM/T6ODM
68
1.14%
TRI/TRII
66
1.11%
GS
63
1.06%
HCT
62
1.04%
H6H
58
0.97%
T16H
58
0.97%
G8O/G8H
57
0.96%
PMT
56
0.94%
CSE
55
0.92%
GES
54
0.9%
RAS
54
0.9%
TPS
54
0.9%
16OMT
50
0.84%
CCR
50
0.84%
CHS
45
0.75%
F5H/CYP84A
45
0.75%
IFR
42
0.7%
SGD
40
0.67%
FNS
40
0.67%
ANR
40
0.67%
PAL
39
0.65%
CYP90D1
38
0.64%
DFR
37
0.62%
SLS
35
0.59%
IO
33
0.55%
F3'5'H/CYP75A
33
0.55%
8HGO
30
0.5%
BBE
26
0.44%
COR
25
0.42%
BR6OX1/CYP85A1
24
0.4%
NCS
23
0.39%
CCoAOMT
23
0.39%
CYP51G1
23
0.39%
ADC
22
0.37%
CPD/CYP90A1
20
0.34%
TYDC_DDC
16
0.27%
ROT3/CYP90C1
16
0.27%
7DLH
15
0.25%
SQS/FDFT1
14
0.23%
CYP80B1
13
0.22%
LAMT
13
0.22%
TAT
13
0.22%
6OMT_4OMT_SOMT
12
0.2%
CYP719
12
0.2%
MPO
12
0.2%
HPPR
11
0.18%
FPPS
11
0.18%
DWF1
10
0.17%
ANS/LDOX
9
0.15%
CHI
8
0.13%
XMT_MXMT_DXMT
7
0.12%
CNMT
7
0.12%
ISY
7
0.12%
CPR
7
0.12%
DWF7
7
0.12%
AACT
7
0.12%
SMO1/SMO2
6
0.1%
GGPPS
6
0.1%
CMK/IspE
5
0.08%
MVK
5
0.08%
DXS
5
0.08%
ODC
4
0.07%
FLS
4
0.07%
FK
4
0.07%
HYD1
4
0.07%
DET2
4
0.07%
SQE
4
0.07%
HDS/IspG
4
0.07%
TDC
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
HMGS
3
0.05%
MDS/IspF
3
0.05%
HMGR
3
0.05%
MCT/IspD
2
0.03%
PMK
2
0.03%
CYP80F1
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 701 | 20 | UGT (261) | View species results |
| Alkaloid pathway | 581 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 578 | 13 | POD (193) | View species results |
| Flavonoid pathway | 355 | 12 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 220 | 7 | C4H (97) | View species results |
| Steroid pathway | 162 | 12 | CAS (69) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2163 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 483 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Csimscaffold1080019040 | Flavonoid | C4H | medium | borderline |
| Csimscaffold1150034150 | Flavonoid | C4H | medium | borderline |
| Csimscaffold14770100380 | Flavonoid | C4H | medium | borderline |
| Csimscaffold21130192870 | Flavonoid | C4H | medium | borderline |
| Csimscaffold22300205170 | Flavonoid | C4H | low | borderline |
| Csimscaffold22300205180 | Flavonoid | C4H | medium | pass |
| Csimscaffold35960313330 | Flavonoid | C4H | medium | borderline |
| Csimscaffold3910329290 | Flavonoid | C4H | medium | borderline |
| Csimscaffold39250329910 | Flavonoid | C4H | medium | borderline |
| Csimscaffold39250329930 | Flavonoid | C4H | medium | borderline |
| Csimscaffold410339390 | Flavonoid | C4H | low | borderline |
| Csimscaffold4420354400 | Flavonoid | C4H | low | borderline |
| Csimscaffold6280414040 | Flavonoid | C4H | medium | pass |
| Csimscaffold7840458250 | Flavonoid | C4H | medium | borderline |
| Csimscaffold8060464650 | Flavonoid | C4H | medium | borderline |
| Csimscaffold8280469620 | Flavonoid | C4H | medium | borderline |
| Csimscaffold9040489540 | Flavonoid | C4H | medium | pass |
| Csimscaffold9040489550 | Flavonoid | C4H | medium | pass |
| Csimscaffold9040489560 | Flavonoid | C4H | medium | pass |
| Csimscaffold9040489570 | Flavonoid | C4H | medium | pass |
| Csimscaffold9810508380 | Flavonoid | C4H | low | borderline |
| Csimscaffold10110004430 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10220006960 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10220006970 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10220006990 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10220007010 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10220007070 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10220007080 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10220007100 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10260007840 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10410011320 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10410011340 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10410011350 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10410011360 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10550013880 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10550013890 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10590014590 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10590014610 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10700017470 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold1080019030 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold1080019040 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold10870020280 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold1090020920 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold1090021150 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold10960022200 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold110023240 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold11110026240 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold11150026560 | Rosmarinic Acid | C4H | low | borderline |
| Csimscaffold1150034150 | Rosmarinic Acid | C4H | medium | pass |
| Csimscaffold11540035150 | Rosmarinic Acid | C4H | medium | pass |