PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
Csimscaffold10030002680 Alkaloid 8HGO low borderline
Csimscaffold12350053230 Alkaloid 8HGO low borderline
Csimscaffold20080177050 Alkaloid 8HGO low borderline
Csimscaffold20080177080 Alkaloid 8HGO low borderline
Csimscaffold20830188460 Alkaloid 8HGO low borderline
Csimscaffold20830188470 Alkaloid 8HGO medium borderline
Csimscaffold21390195380 Alkaloid 8HGO medium pass
Csimscaffold2230204970 Alkaloid 8HGO medium borderline
Csimscaffold2390221780 Alkaloid 8HGO medium borderline
Csimscaffold2420225760 Alkaloid 8HGO medium borderline
Csimscaffold28460264330 Alkaloid 8HGO medium borderline
Csimscaffold29720273680 Alkaloid 8HGO medium borderline
Csimscaffold32820295470 Alkaloid 8HGO medium pass
Csimscaffold340302490 Alkaloid 8HGO medium pass
Csimscaffold3490307500 Alkaloid 8HGO medium borderline
Csimscaffold3560311740 Alkaloid 8HGO medium borderline
Csimscaffold3770321960 Alkaloid 8HGO medium borderline
Csimscaffold390328230 Alkaloid 8HGO medium borderline
Csimscaffold4390352200 Alkaloid 8HGO medium borderline
Csimscaffold5970405150 Alkaloid 8HGO medium pass
Csimscaffold6490419770 Alkaloid 8HGO medium borderline
Csimscaffold7170440420 Alkaloid 8HGO medium pass
Csimscaffold7170440430 Alkaloid 8HGO medium pass
Csimscaffold7170440440 Alkaloid 8HGO medium borderline
Csimscaffold7540450380 Alkaloid 8HGO low borderline
Csimscaffold8070464770 Alkaloid 8HGO medium borderline
Csimscaffold8250469120 Alkaloid 8HGO medium borderline
Csimscaffold8400472840 Alkaloid 8HGO medium borderline
Csimscaffold950500540 Alkaloid 8HGO medium borderline
Csimscaffold9800508340 Alkaloid 8HGO medium borderline