PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.99% Alkaloid pathway 22.37% Phenylpropanoid pathway 22.26% Flavonoid pathway 13.67% Rosmarinic acid pathway 8.47% Steroid pathway 6.24%
Family Distribution
C4H 6.64% BAHD 6.15% C3'H/CYP98A 4.93% UGT 4.83% 4CL 4.37% 7DLGT 3.92% POD 3.79% UFGT 3.7%
Other Families 61.67%
More Families (97)
CYP76 218 3.65% IFS 217 3.64% T3O 188 3.15% DWF4/CYP90B1 154 2.58% NMT 130 2.18% F3H 123 2.06% CAD 118 1.98% F3'H/CYP75B 99 1.66% BR6OX2/CYP85A2 88 1.47% SMT1/SMT2/SMT3 87 1.46% CYP71 86 1.44% COMT 80 1.34% CAS 76 1.27% PYKS 74 1.24% LAC 72 1.21% STR 69 1.16% CODM/T6ODM 68 1.14% TRI/TRII 66 1.11% GS 63 1.06% HCT 62 1.04% H6H 58 0.97% T16H 58 0.97% G8O/G8H 57 0.96% PMT 56 0.94% CSE 55 0.92% GES 54 0.9% RAS 54 0.9% TPS 54 0.9% 16OMT 50 0.84% CCR 50 0.84% CHS 45 0.75% F5H/CYP84A 45 0.75% IFR 42 0.7% SGD 40 0.67% FNS 40 0.67% ANR 40 0.67% PAL 39 0.65% CYP90D1 38 0.64% DFR 37 0.62% SLS 35 0.59% IO 33 0.55% F3'5'H/CYP75A 33 0.55% 8HGO 30 0.5% BBE 26 0.44% COR 25 0.42% BR6OX1/CYP85A1 24 0.4% NCS 23 0.39% CCoAOMT 23 0.39% CYP51G1 23 0.39% ADC 22 0.37% CPD/CYP90A1 20 0.34% TYDC_DDC 16 0.27% ROT3/CYP90C1 16 0.27% 7DLH 15 0.25% SQS/FDFT1 14 0.23% CYP80B1 13 0.22% LAMT 13 0.22% TAT 13 0.22% 6OMT_4OMT_SOMT 12 0.2% CYP719 12 0.2% MPO 12 0.2% HPPR 11 0.18% FPPS 11 0.18% DWF1 10 0.17% ANS/LDOX 9 0.15% CHI 8 0.13% XMT_MXMT_DXMT 7 0.12% CNMT 7 0.12% ISY 7 0.12% CPR 7 0.12% DWF7 7 0.12% AACT 7 0.12% SMO1/SMO2 6 0.1% GGPPS 6 0.1% CMK/IspE 5 0.08% MVK 5 0.08% DXS 5 0.08% ODC 4 0.07% FLS 4 0.07% FK 4 0.07% HYD1 4 0.07% DET2 4 0.07% SQE 4 0.07% HDS/IspG 4 0.07% TDC 3 0.05% CPI1 3 0.05% DWF5 3 0.05% IDI 3 0.05% MVD 3 0.05% HMGS 3 0.05% MDS/IspF 3 0.05% HMGR 3 0.05% MCT/IspD 2 0.03% PMK 2 0.03% CYP80F1 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
Csimscaffold10970022520 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Csimscaffold15330110700 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
Csimscaffold23630219300 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Csimscaffold26760249160 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00007__sp_Q9LEL6_6OMT_COPJA
Csimscaffold2900268530 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO
Csimscaffold330296630 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Csimscaffold330296650 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
Csimscaffold5980405180 Alkaloid 6OMT_4OMT_SOMT low borderline 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
Csimscaffold5980405260 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Csimscaffold5980405270 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
Csimscaffold5980405310 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Csimscaffold6470419250 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO