PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA61871 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62120 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62142 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62295 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62432 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62511 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62585 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62586 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA62625 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA63054 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA63782 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA63824 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA64530 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA64531 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA65064 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA65712 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA66194 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA66195 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA67510 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA67651 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA67975 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA68551 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA71709 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA72561 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA72779 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA73580 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA73760 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA74826 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA74827 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA75481 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA76053 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA76118 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA76286 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA76634 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA77012 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA77032 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA78950 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA78951 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA82422 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA82983 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA83297 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA83427 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA83984 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA83985 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA85905 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA85924 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA85925 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA85926 Flavonoid 4CL medium pass
rhynchospora_pubera_mRNA86300 Flavonoid 4CL low borderline
rhynchospora_pubera_mRNA86640 Flavonoid 4CL medium pass