PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA28435 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA29727 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA29728 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA30390 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA30934 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA30993 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA31201 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA31202 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA31542 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA31543 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA31925 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA31947 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA33875 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA33876 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA34666 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA35237 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA35743 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA35974 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA35999 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36153 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36288 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36374 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36447 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36448 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36489 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36921 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA37502 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA37707 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38328 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38329 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38978 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA39624 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA40092 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA42092 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA42306 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA43121 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA43299 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA44588 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA44589 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45233 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45789 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45848 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA46034 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46393 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46394 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA46772 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46793 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA48759 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA48760 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA49262 Rosmarinic Acid 4CL low borderline