PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA67913 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA68140 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA68323 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA68425 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA68650 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA69007 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA69414 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA69415 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA69739 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA69740 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA69741 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA69995 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70070 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70071 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70074 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70121 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70123 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70124 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70424 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70465 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA70466 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA70467 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA70519 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA70548 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70549 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70942 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70943 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA70944 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71044 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71153 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71154 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA71302 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA7150 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71520 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71525 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA71823 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA71946 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA72740 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA72924 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA72926 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA73961 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74285 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74286 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74314 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74315 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74316 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74356 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74442 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74994 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA74995 Alkaloid 7DLGT low borderline