PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA24744 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24788 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24789 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24791 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24792 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25082 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25122 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA25123 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA25178 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA25207 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25603 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25604 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25605 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25648 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25709 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25801 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA25960 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA26174 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA26345 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA26618 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA27417 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA27606 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA27607 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA27608 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA28636 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29005 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA29062 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29063 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29201 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29202 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29204 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29205 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29206 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29236 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29258 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29887 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA29888 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA30038 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA30435 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA30436 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA30437 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA30438 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA30974 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA31135 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA31137 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA31138 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA31139 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA31140 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA31197 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA31198 Alkaloid 7DLGT medium pass