PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA31252 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA32504 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA32505 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA32624 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA32753 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA32754 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA32911 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA32912 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA32914 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA32915 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA32917 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA33631 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA33750 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA33853 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA33854 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA33855 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA34310 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA34403 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA34405 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA3466 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA34909 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA35753 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36452 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36599 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36600 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36718 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36719 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36720 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36721 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36741 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA36764 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38119 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38121 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38225 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38233 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38356 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA38357 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA38496 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38498 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38499 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38500 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38832 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38833 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38834 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38835 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38836 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38837 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38839 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38840 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38841 Alkaloid 7DLGT low borderline