PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA45823 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA45824 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA45965 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA45967 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA45968 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA45969 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA45970 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA46030 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA46031 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA47362 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA47363 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA47365 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA47493 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA47494 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA47622 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA47788 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA47789 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA47791 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA48517 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA48631 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA48633 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA48734 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA48736 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA48737 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA48738 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA48739 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA49088 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA49266 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA49560 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA49561 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA49661 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA49879 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA50058 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA50159 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA5040 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA50400 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA50401 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA50530 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51222 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51223 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51442 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51445 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA51692 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA51769 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51772 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51775 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51818 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51819 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51821 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA51822 Alkaloid 7DLGT low borderline