PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA52121 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52156 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA52157 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA52158 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA52159 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA52209 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA52237 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52238 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52239 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52482 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52483 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52484 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52584 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52692 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA52862 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA53062 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA53453 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA53766 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA53890 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA53891 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA53939 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA53999 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA540 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54001 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54002 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54015 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA54022 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54023 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54024 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54025 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54026 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54027 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54028 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA54368 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54840 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54944 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54946 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA54947 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55349 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55350 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55429 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55577 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55578 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55579 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55580 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55582 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55583 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55584 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55607 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55608 Alkaloid 7DLGT medium pass