PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA55655 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55656 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55657 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55659 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55660 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55661 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55662 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55663 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55664 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55665 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55666 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55667 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55872 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55873 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA55874 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55875 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA55877 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA56135 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA56136 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA56236 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA56244 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA56352 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA58404 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA5896 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA59251 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA59538 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA59540 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA59542 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA59543 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA59925 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA59927 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA60455 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA60458 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA60843 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA60844 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA61125 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA61881 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA62590 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA62736 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA62858 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA62859 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA62878 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA62902 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64223 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64328 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64501 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA64502 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64588 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64590 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64591 Alkaloid 7DLGT low borderline