PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA13705 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA13739 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA1546 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA15827 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA18612 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19208 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19209 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19210 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19219 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19968 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA24377 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA25582 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA29587 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA31408 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA32037 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA32365 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA35659 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA36539 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38215 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38216 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38956 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38963 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38966 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38968 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA40659 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA4153 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA44451 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA46256 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA46892 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA47225 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA51422 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA52459 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55528 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55529 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55533 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55535 Alkaloid 7DLH medium pass
rhynchospora_pubera_mRNA55536 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55538 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA55539 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA56253 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA56255 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA58495 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA61786 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA62677 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA64317 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA64318 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65042 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65044 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65046 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA65054 Alkaloid 7DLH medium borderline